About
My portfolio
Hello, I'm Hiro!
I work as a Senior Scientist in bioinformatics at Logomix. Previously, I was involved in anticancer drug pharmacology research, microbial genome analysis, and data science at a major probiotic food company. Currently, I'm working on genomics/omics bioinformatics and foundation model development.
My motto is bioinformatics work that is properly repository-managed and can be passed on to future generations.
I'm interested in many things. I've built blogs with WordPress and React. I also enjoy creating small CLI tools in Python and Rust. I love gadgets and have fallen deep into the keyboard hobby.
Experience & Skills
Bioinformatics & Research
- Python
- R (tidyverse)
- Snakemake
- PyTorch
- Diffusion model
- Flow matching model
Tools & Technologies
- Git & GitHub
- GATK
- scVerse, Seurat
- Claude Code
- Codex
- Cursor
What I'm Interested In
AI-Powered Bioinformatics
Streamlining bioinformatics analysis using agent tools like Claude Code
Generative Biology
Pioneering new biology using Transformers and Diffusion models
3D Modeling
Creating lab items with 3D printers
Gadgets
Own 8 keyboards - AliExpress is my best friend
Hiroyuki Odake
Coding "Life"
Technologies I Love
Python
Rust
Snakemake
PyTorch
Diffusion Models
scVerse
Nextflow
Seurat
Scanpy
scGPT
DoubletFinder
Harmony
Streamlit
R Shiny
React
TypeScript
Visual Studio Code
Neovim
Jupyter Lab
RStudio
Docker
Singularity
AWS
Google Cloud Platform
Linux
HPC
SLURM
Git
GitHub
GATK4
Mutect2
Strelka2
CNVKit
Samtools
IGV
NCBI SRA
Ensembl
KEGG
PyTorch Lightning
TensorFlow
scikit-learn
Transformers
Flow Matching
ImageJ
High Content Screening
Automation
fastp
MultiQC
STAR
bwa-mem2
pysam
RNA-seq
scRNA-seq
Whole Genome Sequencing
SNV calling
SV calling
CNV calling
Shotgun Metagenome
Meta-transcriptome
Long-read sequencing
Statistical Modeling
Bayesian Inference
Claude Code
Codex
Cursor
Thanks for stopping by! Feel free to explore the blog and reach out if you'd like to connect.